PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma76g00090.1

Common Name

ZOSMA_76G00090

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 260aa MW: 30019.2 Da PI: 9.06

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma76g00090.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.3	1.6e-15	43	132	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y Y + GF+vr+ ++k ++e++ r++ Csk+g++ + ++ +e+++r+ ++ gC a++ +++++ ++ w+v ++ ++HnH+l+ Zosma76g00090.1 43 YMGYDGNYGFNVRMVSTKIV--DREMIGRRMLCSKQGYAFSAATNdivNERKHRRIRNSCSGCLAMIYISLDRpSNLWRVVNFIQDHNHPLM 132 999**********98887..8899********999988888666666777777889*******9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-13	43	132	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MHIADFCPVP SNQTIEIIGS SSTLYIPDVG QLFSTHDETR DAYMGYDGNY GFNVRMVSTK 60 IVDREMIGRR MLCSKQGYAF SAATNDIVNE RKHRRIRNSC SGCLAMIYIS LDRPSNLWRV 120 VNFIQDHNHP LMTPSKKRYL SVNRVITHLS RALFQSLNTS NISPNDQYCV AVQETGGFDY 180 IQFIPSDLSN MRRDDRRNII QRDADLLIER FEENQTKSFD FSSRSLGMKM VIYKAISYFF 240 AKLTISKYQY HLLQYMSSM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NNU4	0.0	A0A0K9NNU4_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.2	4e-13	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Zosma76g00090.1