PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma76g00750.1
Common NameZOSMA_76G00750
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 198aa    MW: 23282.6 Da    PI: 10.3548
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma76g00750.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.3e-1751105256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k q  +Le+ F+ +++++ +e+  LAk l+L  rqV vWFqNrRa++k
  Zosma76g00750.1  51 RKKLRLSKLQSSTLENTFKLHHTLNPKEKMALAKDLKLRPRQVEVWFQNRRARKK 105
                      6778899**********************************************98 PP
2HD-ZIP_I/II113.61.3e-3651139189
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      +kk+rlsk q+++LE++F+ +++L+p++K++la++L+l+prqv+vWFqnrRAR k+k++E+d+e+Lkr +++l+een+rL+ke  +L++
  Zosma76g00750.1  51 RKKLRLSKLQSSTLENTFKLHHTLNPKEKMALAKDLKLRPRQVEVWFQNRRARKKLKKTEVDCEMLKRYCENLSEENRRLQKELMDLKA 139
                      69***********************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.13147107IPR001356Homeobox domain
SMARTSM003894.1E-1449111IPR001356Homeobox domain
SuperFamilySSF466893.17E-1749115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-1751105IPR009057Homeodomain-like
PfamPF000465.3E-1551105IPR001356Homeobox domain
CDDcd000861.04E-1251108No hitNo description
PROSITE patternPS00027082105IPR017970Homeobox, conserved site
PfamPF021833.4E-9107139IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.4E-12107150IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MESKDLRLTL SLRASSEHST AIDSTSHHRF VQDWMLREKQ KSDQEDGING RKKLRLSKLQ  60
SSTLENTFKL HHTLNPKEKM ALAKDLKLRP RQVEVWFQNR RARKKLKKTE VDCEMLKRYC  120
ENLSEENRRL QKELMDLKAP NRNTNVKPIN LPMQITTCPS CQRRINNDGD FDSFHRQRIS  180
NLYRLPTVDG TNDYCPT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199107RRARKKLKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827348.12e-47PREDICTED: homeobox-leucine zipper protein HAT4
RefseqXP_022029719.12e-47homeobox-leucine zipper protein HAT4-like
SwissprotA2Z1U11e-46HOX11_ORYSI; Homeobox-leucine zipper protein HOX11
SwissprotQ67UE25e-46HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A0K9NP131e-144A0A0K9NP13_ZOSMR; Homeobox-leucine zipper protein HOX3
STRINGMigut.A01145.1.p7e-47(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.13e-48homeobox protein 2