PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma778g00030.1
Common NameZOSMA_778G00030
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 311aa    MW: 33888.6 Da    PI: 7.3013
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma778g00030.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.4e-1762111255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f ta eAaka+++a+  l+g
  Zosma778g00030.1  62 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFSTAVEAAKAYDRAAVMLYG 111
                       59****999.**********954...5*********************987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.4E-3562125IPR001471AP2/ERF domain
CDDcd000181.33E-3062121No hitNo description
SuperFamilySSF541717.85E-2062120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-2862119IPR001471AP2/ERF domain
PROSITE profilePS5103221.62862119IPR001471AP2/ERF domain
PfamPF008472.7E-1162111IPR001471AP2/ERF domain
PRINTSPR003671.2E-96374IPR001471AP2/ERF domain
PRINTSPR003671.2E-985101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEEGADQSRC PIEQYHHRNQ PSTEVDDSSN NNGTSSSNSS CTRSPTRCCR RGKGGPDNGK  60
FRYRGVRQRS WGKWVAEIRE PRKRTRKWLG TFSTAVEAAK AYDRAAVMLY GSRAQLNLQP  120
SAPVRSSASS SSTSTLRPLL PRPSGFIFPT GAGSKVANVN PSVFVYPTNR TDAGDYYLYN  180
KCNNFSDTSS PSPRVNYIQQ ELQFLQQEQD LVQDAVLHPP TTLLGPSTTS PTLLMTGAVN  240
SLDISSKTTS PSTLLEPDFP AEGDTSLVQQ PPSSTSGIAV GGGIMSPPVW DDYTTSCLWD  300
DPMDPFLFDL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1663118359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NNU80.0A0A0K9NNU8_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133032632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.13e-30ERF family protein