PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma77g00220.1

Common Name

ZOSMA_77G00220

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

DBB

Protein Properties

Length: 298aa MW: 32458.8 Da PI: 5.5425

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma77g00220.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.8	7.7e-07	4	42	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ + ++ ++ fC ++ lC++C + H H Zosma77g00220.1 4 QCDVCANEVASAFCCADEAALCATCDVRVHTAnklaakH 42 7**************************999544555554 PP
2	zf-B_box	34.5	4.2e-11	58	98	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++C+ ++ek++ lfC++++ lC dC +++H+ Ht Zosma77g00220.1 58 PRCDVCQEKKALLFCQQDRAILCGDCDSSIHSVneftmkHT 98 79*****************************4366666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	4.0E-11	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.542	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	2.26E-6	3	47	No hit	No description
Pfam	PF00643	4.2E-5	4	42	IPR000315	B-box-type zinc finger
SMART	SM00336	1.2E-14	55	102	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.6E-9	58	99	IPR000315	B-box-type zinc finger
CDD	cd00021	3.79E-10	58	102	No hit	No description
PROSITE profile	PS50119	9.599	60	102	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MRVQCDVCAN EVASAFCCAD EAALCATCDV RVHTANKLAA KHPRFSLVHP ISSDALAPRC 60 DVCQEKKALL FCQQDRAILC GDCDSSIHSV NEFTMKHTRF LLAGLKISSI ATPMEISPSS 120 SVVVDVTQIT EKKKIKKVSC ELTDLIGNGN GDKVSGIDGR GDFCENLINT LPRWKIDNLL 180 LDYLTATTAG AGSCSSVLPT AHTTDADLGQ MGFDQGKEKN IDMVSFPFMG HDEFHLDSNG 240 FNSFEAPPRL ISQVPQFPVQ SSTTTVNFHR SAEMEKQRWD WVGGCDEFGT VPHIAYF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NP25	0.0	A0A0K9NP25_ZOSMR; Putative salt tolerance-like protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2392	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	9e-51	salt tolerance homolog2

Link Out ? help Back to Top
Phytozome	Zosma77g00220.1