PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma77g00470.1
Common NameZOSMA_77G00470
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 728aa    MW: 79987.8 Da    PI: 7.0809
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma77g00470.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.11e-201671156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +++ +++t+ q++eLe+ F+++++p++++r +L++ lgL+ +q+k+WFqNrR+++k
  Zosma77g00470.1 16 KKRYHRHTPRQIQELEATFKECPHPDEKQRMQLSRDLGLEPKQIKFWFQNRRTQMK 71
                     678899***********************************************998 PP
2START153.61.6e-482244482206
                      HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      la +a++el+++a+ eep+W ks+     +++n +++ + f++ +       ++ea+r s +   ++a+lv  l+d++ +W   ++    ka +
  Zosma77g00470.1 224 LAASAMAELIRLAQTEEPLWIKSAltngsDILNLETYGRMFQRFNHfnnpnIRSEASRGSEMISINSATLVDLLVDTN-KWIDLFPtiisKARI 316
                      67899************************77777777777754333688999**************************.99888888888**** PP

                      EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
            START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                      lev+ +g      g l+lm+ e q+lsplv+ R+f f+Ry++q ++g w+i dvSvd +++++  +++  +++lpSg+li++++ng skvtwv 
  Zosma77g00470.1 317 LEVLAPGipgtrsGSLVLMYEEVQVLSPLVStREFSFLRYCQQVEQGLWAITDVSVDLPREKQ-FAPSFSSKKLPSGCLIQEMPNGCSKVTWVV 409
                      **************************************************************9.7999999*********************** PP

                      -EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 169 hvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                      h+++++++p h l+r lv sg+a+ga++w+atl+r ce+
  Zosma77g00470.1 410 HMEVEEKSPtHGLYRELVDSGIAFGAQRWLATLKRMCER 448
                      *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.77E-20771IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-211172IPR009057Homeodomain-like
PROSITE profilePS5007117.5081373IPR001356Homeobox domain
SMARTSM003891.5E-171477IPR001356Homeobox domain
CDDcd000867.94E-191571No hitNo description
PfamPF000462.6E-181671IPR001356Homeobox domain
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PROSITE profilePS5084848.764214451IPR002913START domain
CDDcd088751.28E-102221447No hitNo description
SuperFamilySSF559619.06E-33221449No hitNo description
SMARTSM002349.2E-41223448IPR002913START domain
PfamPF018522.7E-41224448IPR002913START domain
Gene3DG3DSA:3.30.530.204.0E-10277448IPR023393START-like domain
SuperFamilySSF559612.11E-17505720No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MDFGEDPYVS DSQRRKKRYH RHTPRQIQEL EATFKECPHP DEKQRMQLSR DLGLEPKQIK  60
FWFQNRRTQM KACYLLLTQH ERADNCTLRA ENDKIRYENI AMREALKNII CPTCGGPPVS  120
EEYYFDEHKL RMENARLKEE LDRASSISSK YLGRPINQHH IPSAQPLHMM SSLDLTVGSF  180
GSNAMGPSLD LDLLPGNHSS VHHQLPFPMV LPNAAVASSF MTDLAASAMA ELIRLAQTEE  240
PLWIKSALTN GSDILNLETY GRMFQRFNHF NNPNIRSEAS RGSEMISINS ATLVDLLVDT  300
NKWIDLFPTI ISKARILEVL APGIPGTRSG SLVLMYEEVQ VLSPLVSTRE FSFLRYCQQV  360
EQGLWAITDV SVDLPREKQF APSFSSKKLP SGCLIQEMPN GCSKVTWVVH MEVEEKSPTH  420
GLYRELVDSG IAFGAQRWLA TLKRMCERIS CLMTAPDAST RELGGCGGAE GKRRMNLSQR  480
MVSNFCASLS PSTTNDSPSG TSQRWTNLTG VNDVGVRVTV HKSTDPGQPN GVVLSAATSI  540
WLPVSCNTIF NFFKDERTRS QWDVLSNGNP VQEIAHITNG SSHPGNRISL LRAFNSSQNN  600
MLILQESCSD SSGSLVVYAP VELPAINIAM SGEDPSYIPL LPSGFSILPD WRSSSGTGGG  660
GASTSSNTGS IVPGGGGSGG SLVTVAFQIL VSSLPSAKIN VESINTVNNL ISTTVQQIKS  720
ALNCTTV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806630.10.0homeobox-leucine zipper protein ROC8-like
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A0K9NP460.0A0A0K9NP46_ZOSMR; Homeobox-leucine zipper protein ROC8
STRINGXP_008806630.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11