PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma77g00500.1
Common NameZOSMA_77G00500
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 236aa    MW: 27211.1 Da    PI: 6.7635
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma77g00500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-18449147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed++l+d+vk++G+++W++Ia++++ gR++k+c++rw++ 
  Zosma77g00500.1  4 RGHWRPSEDQQLKDLVKEYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49
                     899*****************************.***********996 PP
2Myb_DNA-binding49.88e-165699146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     r ++T+e++e+l+   + +G++ W+ Iar ++ gRt++ +k++w+ 
  Zosma77g00500.1 56 RTPFTEEDEEKLIASQRIHGNR-WAVIARLFP-GRTDNAVKNHWHV 99
                     679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.318154IPR017930Myb domain
SMARTSM007171.1E-15352IPR001005SANT/Myb domain
PfamPF002498.1E-18449IPR001005SANT/Myb domain
SuperFamilySSF466893.07E-28497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-26557IPR009057Homeodomain-like
CDDcd001677.63E-14748No hitNo description
SMARTSM007171.0E-1455103IPR001005SANT/Myb domain
PROSITE profilePS5129419.06155105IPR017930Myb domain
PfamPF002499.7E-135698IPR001005SANT/Myb domain
CDDcd001678.65E-115898No hitNo description
Gene3DG3DSA:1.10.10.604.4E-1958103IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MCSRGHWRPS EDQQLKDLVK EYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRTPFT  60
EEDEEKLIAS QRIHGNRWAV IARLFPGRTD NAVKNHWHVI MARNCREMSR YCTNKTTEGN  120
TSDVDGNESN LDNNKNNKIP ESRLSKRSKM DIIPTCYHPK LVTADSDDDD ATIQFYDFLQ  180
VTKYNSDDAN ANQNNRSCCS KPYDEKETDE AEQKNERWVP FIDFLAVGKC SSDGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-3211051105C-Myb DNA-Binding Domain
1msf_C7e-3211051105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010911701.11e-80transcription factor MYB52
SwissprotQ6R0C43e-71MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A0K9NNP91e-177A0A0K9NNP9_ZOSMR; Uncharacterized protein
STRINGXP_008787882.12e-79(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.13e-72myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]