PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma77g00520.1
Common NameZOSMA_77G00520
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 200aa    MW: 22092.8 Da    PI: 9.0357
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma77g00520.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.83.4e-08122195372
             FAR1   3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 
                      Y ++A+++GFsvr  ++++     + ++  + +++ Csk+g ++     t+ +rr++ ++r+gC  ++k k+ +
  Zosma77g00520.1 122 YYDFASSTGFSVRLGSMHNIldkqTVQKILVIKRLLCSKQGDPNLILPPTNGTRRKNGVSRCGCLKSIKFKRIY 195
                      999***********9998765543555666789***********9999999**************999999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-5122193IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MNYQFNSPHY QTTVNPIDSS VNVSRSLDPD NVRCNFFDSE NVQSVSTDIG ESCVQIPVNS  60
ANVSCGTAKT LNNHLKRKFS STDGYPTSPN HENGSSDYSQ SSKPCPIVGE VFSSYEMVVQ  120
SYYDFASSTG FSVRLGSMHN ILDKQTVQKI LVIKRLLCSK QGDPNLILPP TNGTRRKNGV  180
SRCGCLKSIK FKRIYRSDK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2562141e-87AC256214.1 Zostera marina clone XTP02-B06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NP531e-144A0A0K9NP53_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.17e-07FAR1-related sequence 11