PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma77g00560.1
Common NameZOSMA_77G00560
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 359aa    MW: 39784.2 Da    PI: 5.8119
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma77g00560.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-18184238256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Lee F+++++p+ +++  LA+kl+L  rqV vWFqNrRa+ k
  Zosma77g00560.1 184 RKKLRLSKEQSAYLEESFKEHNTPNPKQKLALADKLNLRPRQVEVWFQNRRARTK 238
                      778899***********************************************98 PP
2HD-ZIP_I/II121.93.1e-39184274192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlskeq++ LEesF+e+++ +p++K +la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr +lk
  Zosma77g00560.1 184 RKKLRLSKEQSAYLEESFKEHNTPNPKQKLALADKLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCEKLTEENRRLQKELQELR-ALK 274
                      69*************************************************************************************9.665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-18170234IPR009057Homeodomain-like
SuperFamilySSF466891.09E-18175241IPR009057Homeodomain-like
PROSITE profilePS5007117.686180240IPR001356Homeobox domain
SMARTSM003891.6E-16182244IPR001356Homeobox domain
PfamPF000465.5E-16184238IPR001356Homeobox domain
CDDcd000868.59E-17184241No hitNo description
PROSITE patternPS000270215238IPR017970Homeobox, conserved site
CDDcd146864.39E-4231272No hitNo description
PfamPF021834.5E-10240274IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.4E-24240283IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDMELGLYLG DAPVRTPKQP FFLADDSHKN AGVELGLGFC MGDGLLERRD EEDEEEDEEE  60
LEDERRGTAS SAHPITSLQH LIPFSRATKK SSLKPPWHTG NSGINMDGCS RGGLDVNMIP  120
LMDETDQDGG GSAAAGTSSS PNSGGVSSFQ MDLSIYRTGA GTVEGIERAS SRASDEEENN  180
GSTRKKLRLS KEQSAYLEES FKEHNTPNPK QKLALADKLN LRPRQVEVWF QNRRARTKLK  240
QTEVDCEYLK KCCEKLTEEN RRLQKELQEL RALKSAHPYY MHVPATTLTM CPSCEKIASA  300
TTTPTLTNNK PDNGLEINHD GQKTDSPWSS FLNPFWHQQK TPTATTTTTT RHHNSAAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182188TRKKLRL
2232240RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848897.18e-99PREDICTED: homeobox-leucine zipper protein HOX11 isoform X2
SwissprotP466653e-77HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A0K9NNQ30.0A0A0K9NNQ3_ZOSMR; Homeobox-leucine zipper protein HAT14
STRINGEOY095241e-97(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-70homeobox from Arabidopsis thaliana