PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma782g00020.1
Common NameZOSMA_782G00020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 365aa    MW: 39818.3 Da    PI: 8.7678
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma782g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.27.1e-102323022190
              FAR1  21 kskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       k++ ++  +++++ Csk+g+++   + t+ +rr++ ++r+gC  ++k k+ + ++kw+ ++l+l+ nH+++
  Zosma782g00020.1 232 KETGQKILVMKKLLCSKQGSPNLILSPTNGTRRKNGVSRCGCLTSIKFKRIDrSDKWVTDSLNLDRNHPFT 302
                       44456678899************99999***********************99***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-6233302IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MASPTSFGNQ HRPTSLQVSP NTNSIFVTPP PYRSQQFTYD HTNTSCNVSL KFHFNSLQCQ  60
TNVNTKPSNV AFSTPLDPDA PASNIVQSDF VQCTSAEIKK SSANMSYETA KIPNSINYQF  120
NSPHCQTTVN PIDSSVNVSR SLDPDNVRCN FFDSENVQSA SADIGESSVQ IPANSANVSC  180
GTAKTPDNHL KRIFSSTGGY PTSPNHENGS SGYSQSSKPY PIVGSTQNIL NKETGQKILV  240
MKKLLCSKQG SPNLILSPTN GTRRKNGVSR CGCLTSIKFK RIDRSDKWVT DSLNLDRNHP  300
FTTPSKIRYL PINRLISHIF EILFSSLADV NVPVSQQTVY FSNQLGGPEN MGAPHDIGHQ  360
QYGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2562140.0AC256214.1 Zostera marina clone XTP02-B06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NQT20.0A0A0K9NQT2_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494