PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma78g00340.1
Common NameZOSMA_78G00340
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 172aa    MW: 19566.6 Da    PI: 10.4252
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma78g00340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.71.4e-113781147
             FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47
                     +fY +YA+++GFsvrks+++++  ++ it+rt+vCsk+gk++    +
  Zosma78g00340.1 37 NFYYRYASRIGFSVRKSTTSSN--THGITRRTLVCSKKGKSNAIVPS 81
                     6***************987766..666*************9875544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.2E-93788IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MEFSTQDNTD LDLQQSITSN DHPSTDMSFR TIEDAENFYY RYASRIGFSV RKSTTSSNTH  60
GITRRTLVCS KKGKSNAIVP SSTTSSKKNG ILEILELDAR LKLHLLLKTT FGSFLYASLH  120
TITYWLHLRK GGFFPQIRKS HLTLGTLFMI WKLVILLQAN STRMFQCKMM V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NND01e-123A0A0K9NND0_ZOSMR; Uncharacterized protein