PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma78g00840.1

Common Name

ZOSMA_78G00840

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

TCP

Protein Properties

Length: 563aa MW: 59650 Da PI: 9.2856

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma78g00840.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.4	7.6e-36	139	254	3	108
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+ +tgt++++a+++ ++s +ss+s+ s++ Zosma78g00840.1 139 AAKRSSKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIISATGTGTIPANFStLNVSIRSSGSTISAPpsksaph 232 689************************************************************9999988865555555555322224444433 PP TCP 89 ..kaaksaakskksqksaasal 108 ++a s a+++++++++ a+ Zosma78g00840.1 233 sfHSALSLAQQHQQRQPNFDAR 254 3322222222222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.9E-38	143	289	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.861	144	198	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
MDTADQQGRV SGGGSGGGGG GLGSNSNSSN SSNRSNSEHP HHYQQKPEGG AGGGSSAGLQ 60 LVSFEGRDHH QHQHLQQQQQ KQVVVVGGTG TSGGTGPYMD ASVLQNQGVN ASLAISTTKS 120 TDMEAAGSKK VGVTSTSNAA KRSSKDRHTK VDGRGRRIRM PATCAARVFQ LTRELGHKSD 180 GETIEWLLQQ AEPAIISATG TGTIPANFST LNVSIRSSGS TISAPPSKSA PHSFHSALSL 240 AQQHQQRQPN FDARNGPEFS HSAAAVMGFQ QPQHLHHQQH NHTRNEHQIH GQEFHDGAAP 300 ATPSSAGGAD SSTEMYSRKR YRDDLFKEDA HKQQNSSGGV GGGGGPSLSQ SYSKSPRHQQ 360 QQQDHHQQQQ PTSSVGLIRP ANVVPTAAMW AVPNSAAGAF WMLPFTGSNN NNPAVVTTMG 420 GLSDPQPVWT FPTPTEQYRT PIPAPGGPVT SNPIQQPLHF MSRINIPSTG LEFQSASGRT 480 LPLGSMLLQQ QQQPNPAASA SQHHLGLSGS DSANLGMLAA LNAYNRSSLS INPDQNPPPH 540 HLRHQPQQRD ESNEDDRQTN SQ*

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

MDTADQQGRV SGGGSGGGGG GLGSNSNSSN SSNRSNSEHP HHYQQKPEGG AGGGSSAGLQ  60
LVSFEGRDHH QHQHLQQQQQ KQVVVVGGTG TSGGTGPYMD ASVLQNQGVN ASLAISTTKS  120
TDMEAAGSKK VGVTSTSNAA KRSSKDRHTK VDGRGRRIRM PATCAARVFQ LTRELGHKSD  180
GETIEWLLQQ AEPAIISATG TGTIPANFST LNVSIRSSGS TISAPPSKSA PHSFHSALSL  240
AQQHQQRQPN FDARNGPEFS HSAAAVMGFQ QPQHLHHQQH NHTRNEHQIH GQEFHDGAAP  300
ATPSSAGGAD SSTEMYSRKR YRDDLFKEDA HKQQNSSGGV GGGGGPSLSQ SYSKSPRHQQ  360
QQQDHHQQQQ PTSSVGLIRP ANVVPTAAMW AVPNSAAGAF WMLPFTGSNN NNPAVVTTMG  420
GLSDPQPVWT FPTPTEQYRT PIPAPGGPVT SNPIQQPLHF MSRINIPSTG LEFQSASGRT  480
LPLGSMLLQQ QQQPNPAASA SQHHLGLSGS DSANLGMLAA LNAYNRSSLS INPDQNPPPH  540
HLRHQPQQRD ESNEDDRQTN SQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007041329.2	1e-108	PREDICTED: transcription factor TCP8
TrEMBL	A0A0K9NNX0	0.0	A0A0K9NNX0_ZOSMR; Uncharacterized protein
STRING	EOX97160	1e-108	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	7e-57	TCP family protein

Link Out ? help Back to Top
Phytozome	Zosma78g00840.1