PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma79g00170.1
Common NameZOSMA_79G00170
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 380aa    MW: 42256.7 Da    PI: 7.0743
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma79g00170.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-174292155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g
  Zosma79g00170.1 42 PRYRGVRRRP-WGRFAAEIRDPL----SkERRWLGTFDTAEQAACAYDYAARAMRG 92
                     68********.**********73....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.45E-2942102No hitNo description
PfamPF008471.1E-104292IPR001471AP2/ERF domain
PROSITE profilePS5103222.22143100IPR001471AP2/ERF domain
SMARTSM003805.5E-3243106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-2943100IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2143101IPR016177DNA-binding domain
PRINTSPR003674.4E-94455IPR001471AP2/ERF domain
PRINTSPR003674.4E-96682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDPTSSVPTV RESRRGKRSS SAASTCISKL RCGGNGTGVE IPRYRGVRRR PWGRFAAEIR  60
DPLSKERRWL GTFDTAEQAA CAYDYAARAM RGVKARTNFN YATPPPPPLH PRPSATRHHH  120
QDWPWNASGD AVSADPATQN APPPHSSSLN AVLLRNLISS SSHVFTVLPS NVDVSSTQSS  180
YSSNVNDVII SPSPAIAHRY SDVHGITDDL DLEDAFPLEQ PPYSGLLEEV TRGFFPKKEK  240
KIEISNISAT AAAATTNTIH CYNPPKKKTV QSTLDEAHRR DRRVFGTSYN TAVDLFQNDD  300
HLYYYSQQQK QNHQLLNPVD YYPNGEIDYY GDGGVGGDLH RKFSDHEEDF PMASQGLLED  360
VIQYPRFLEV FSSTFHDTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-203399471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NN570.0A0A0K9NN57_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.16e-14DORNROSCHEN-like