PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma79g00230.1
Common NameZOSMA_79G00230
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 239aa    MW: 27135.1 Da    PI: 9.9482
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma79g00230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.6e-161158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd ll ++++++G g+W+ ++++ g++R++k+c++rw++yl
  Zosma79g00230.1 11 KGAWSCEEDVLLTRYIEKHGEGNWSHVPARAGLRRCRKSCRLRWLNYL 58
                     79********************************************97 PP
2Myb_DNA-binding46.39.5e-1564108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg ++++E + +++++++lG++ W++Ia +++ gRt++++k++w+ +
  Zosma79g00230.1  64 RGHFSADEVDMIIRLHNLLGNK-WSLIAGRIP-GRTANDIKNHWNAH 108
                      799*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-22661IPR009057Homeodomain-like
PROSITE profilePS5129416.914658IPR017930Myb domain
SuperFamilySSF466891.39E-288105IPR009057Homeodomain-like
SMARTSM007171.1E-121060IPR001005SANT/Myb domain
PfamPF002492.0E-151158IPR001005SANT/Myb domain
CDDcd001671.15E-91358No hitNo description
PROSITE profilePS5129423.35259113IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-2362112IPR009057Homeodomain-like
SMARTSM007171.1E-1363111IPR001005SANT/Myb domain
PfamPF002491.5E-1364109IPR001005SANT/Myb domain
CDDcd001671.55E-967109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSQIEDISVR KGAWSCEEDV LLTRYIEKHG EGNWSHVPAR AGLRRCRKSC RLRWLNYLRP  60
NIKRGHFSAD EVDMIIRLHN LLGNKWSLIA GRIPGRTAND IKNHWNAHLS KKPAIKWNTT  120
TTKKKKTKKK KRTASVVPFA AVTNVTETCS GEVIKPQPRT LISNIQRFGP ESVDGNLRIG  180
NHDLPPSPIL TMDLQIIPIC EWDGWSPGIS SSGVNHTAEV MEGEDEFFDN FWEKLFEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-20111124104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FNV99e-52MY113_ARATH; Transcription factor MYB113
TrEMBLA0A0K9NQ421e-176A0A0K9NQ42_ZOSMR; Myb-related transcription factor
STRINGGorai.001G087400.15e-57(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-52myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]