PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma79g00250.1
Common NameZOSMA_79G00250
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 121aa    MW: 14305.6 Da    PI: 10.8903
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma79g00250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27e-173683148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd ll ++++++G g+W+ ++++ g++R++k+c++rw++yl
  Zosma79g00250.1 36 KGAWSCEEDVLLTRYIEKHGEGNWSHVPARAGLRRCRKSCRLRWLNYL 83
                     79*********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.2183187IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-223186IPR009057Homeodomain-like
SMARTSM007171.1E-123585IPR001005SANT/Myb domain
PfamPF002495.5E-163683IPR001005SANT/Myb domain
SuperFamilySSF466896.8E-2337114IPR009057Homeodomain-like
CDDcd001671.81E-93883No hitNo description
PROSITE profilePS500903.98484120IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-887117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MWTVINYIHL SRTRRIYRIL NRKRSMSQIE DISVRKGAWS CEEDVLLTRY IEKHGEGNWS  60
HVPARAGLRR CRKSCRLRWL NYLRPNIKRG HFSADEVDMI IRLHNLLGNK YVIITSHACS  120
*
Functional Description ? help Back to Top
Source Description
UniProtActivates DODA1 and CYP76AD1 in the betalain red pigment pathway.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: This dominant Y allele is highly expressed, resulting in an inner red flesh of the beet. {ECO:0000305|PubMed:25436858}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744843.12e-41PREDICTED: transcription factor MYB114-like isoform X2
SwissprotM1ETA52e-33MYB1R_BETVU; Transcription factor MYB1
TrEMBLA0A0K9NN411e-82A0A0K9NN41_ZOSMR; Uncharacterized protein
STRINGGorai.001G087400.12e-39(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-35myb domain protein 113
Publications ? help Back to Top
  1. Stracke R, et al.
    Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet (Beta vulgaris).
    BMC Plant Biol., 2014. 14: p. 249
    [PMID:25249410]
  2. Hatlestad GJ, et al.
    The beet Y locus encodes an anthocyanin MYB-like protein that activates the betalain red pigment pathway.
    Nat. Genet., 2015. 47(1): p. 92-6
    [PMID:25436858]