PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma7g00740.1

Common Name

ZOSMA_7G00740

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Dof

Protein Properties

Length: 171aa MW: 19097.4 Da PI: 10.3429

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma7g00740.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118	3.6e-37	65	120	4	59
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + l+cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GGalrnvPvG+grrk Zosma7g00740.1 65 SGLPCPRCKSRETKFCYFNNYNVNQPRHFCRGCHRYWTAGGALRNVPVGAGRRKTT 120 5689*************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.5E-30	67	119	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.099	67	121	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-24	67	119	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	69	105	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:1902455	Biological Process	negative regulation of stem cell population maintenance
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MVDSHVEQAR REQHPQTPTT PTTAPGFKLF GKRILAEAEQ PSTNKNENEN ENSPEKIQPH 60 HTSASGLPCP RCKSRETKFC YFNNYNVNQP RHFCRGCHRY WTAGGALRNV PVGAGRRKTT 120 VSLAPARSGT ETGNPNGVMM DGVVVQQWLM SRDGFPAKRT HVTSFHDRIR *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Transcriptional repressor of 'CONSTANS' expression (By similarity). Regulates a photoperiodic flowering response. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ009900	2e-98	AJ009900.1 Zostera marina microsatellite DNA, clone ZosmarGA-2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002266522.2	1e-42	PREDICTED: dof zinc finger protein DOF1.5
Swissprot	O22967	7e-38	CDF4_ARATH; Cyclic dof factor 4
TrEMBL	A0A0K9NPY6	1e-125	A0A0K9NPY6_ZOSMR; Cyclic dof factor 4
STRING	VIT_10s0003g01260.t01	5e-42	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6495	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	3e-38	Dof family protein

Link Out ? help Back to Top
Phytozome	Zosma7g00740.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Bueso E, et al. Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration. Plant J., 2016. 87(6): p. 583-96 [PMID:27227784]