PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma7g00960.1

Common Name

ZOSMA_7G00960

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Protein Properties

Length: 226aa MW: 26210 Da PI: 10.2778

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma7g00960.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.9	3.7e-13	131	218	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l+ pk+f + + +++ ltl de+g++ + + rk++ l++GW++F ++gL +gD ++F+l+++++f ++ Zosma7g00960.1 131 FVKPMSQSHVTGGFWLSPPKSFS-VYL-P-KSNEYLTLIDEDGNESKSLYLARKNG----LSAGWRGFSIEHGLVDGDALIFELINSNTF--KIY 216 89*************999997.552.2.24458***********667776....***********************88777..444 PP EE CS B3 96 vf 97 ++ Zosma7g00960.1 217 IV 218 43 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.14E-18	125	219	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.2E-14	125	219	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.22E-19	129	219	No hit	No description
PROSITE profile	PS50863	10.292	131	221	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-10	131	218	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-15	131	221	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MADYEKLRQK KLEENKRKID ELKLNQLSVS LSGSVLKPSP NKQFKRRLVD HVPKLLSLRR 60 SNRLANLPEP VKYKEDQLYY LMEKPRRRTR SYTSTRKDLI NRVYASEESR DLTERKAYKL 120 MDEKQSGFPS FVKPMSQSHV TGGFWLSPPK SFSVYLPKSN EYLTLIDEDG NESKSLYLAR 180 KNGLSAGWRG FSIEHGLVDG DALIFELINS NTFKIYIVRV RDHCS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004972573.1	7e-72	B3 domain-containing protein Os06g0194400
Swissprot	Q69V36	1e-68	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A0K9NMT9	1e-163	A0A0K9NMT9_ZOSMR; B3 domain-containing protein
STRING	Si014404m	3e-71	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-52	B3 family protein

Link Out ? help Back to Top
Phytozome	Zosma7g00960.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]