PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma7g01270.1
Common NameZOSMA_7G01270
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 215aa    MW: 24487.8 Da    PI: 10.0495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma7g01270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-0965112454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++  rE++RRd++N++f eL ++l +    + +  +K++iL  A++ +++L
  Zosma7g01270.1  65 TKAYREKKRRDNLNDRFYELASVLNPT---TPPTSDKVAILNDATNRLNQL 112
                     66789*******************998...7888************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.76361112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-765112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1265133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-1166134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-667118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.44E-969117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MPSGGWCIDY GVYEEPRSTE FLWPSNRQDD GLVFAYSMDP ANKTTCSSSS TRKRIRVESS  60
AQPNTKAYRE KKRRDNLNDR FYELASVLNP TTPPTSDKVA ILNDATNRLN QLRLELQRIR  120
QSNDSLLENV MKIKAEKTQL RNVKARLKVE KAKMERILNS PHPHVHPALH KTSTTYSKAT  180
APYDLNYPPA VMWQWIPPAV LDTSQDHVLR PPVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15173RKRIRVESSAQPNTKAYREKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020101359.15e-65transcription factor bHLH115-like
TrEMBLA0A0K9NMY51e-158A0A0K9NMY5_ZOSMR; BHLH transcription factor 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93863136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.18e-45bHLH family protein