PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma7g01710.1
Common NameZOSMA_7G01710
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 419aa    MW: 47584 Da    PI: 9.4125
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma7g01710.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.55e-14389690
            FAR1  6 YAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                    YA ++GF+vr+ ++k s  ++e++ r++  sk+g++  ++++    ++++r+  ++r gC a++ +++++ +  w+v ++ ++HnH+l+
  Zosma7g01710.1  3 YAGNIGFNVRMGSTKIS--DHEMVGRRMLYSKQGYAPLTDTTnnvIDRKHRRIRNSRSGCLAMIYISLDRsTRLWRVVNFIEDHNHPLV 89
                    *************9999..8889999*********998888866666777778899************99899**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-12289IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.163236274IPR007527Zinc finger, SWIM-type
SMARTSM005754.6E-4249276IPR006564Zinc finger, PMZ-type
PfamPF044343.4E-5249267IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGYAGNIGFN VRMGSTKISD HEMVGRRMLY SKQGYAPLTD TTNNVIDRKH RRIRNSRSGC  60
LAMIYISLDR STRLWRVVNF IEDHNHPLVT PSKRRYLPVN RVITPLSRTL FQSLNTSNIS  120
PNDQYCVAAQ EAGGFDHMQY TPSDLSNMRR DDRCNIIQRD ADLLIELFEE RRNKSSDFFF  180
SFTRHDNGHL SNLFWADPGC RHDYDLFGDS ITFDTTYKTN KYNLIFDAVS IGSFEVSGTI  240
DIGDEGVYAK CTCRLFESFG IPCRHIICYI TLNTISILPE TLVCNHWRAI QRKRPTTSSH  300
TTDLNDTGNL RPLFNHLISL AGESKAKIIY ARKILEDGIK SITDNQTGSD IAKVHGSITR  360
FHDSNTQSID IGNPEVARTK GCGNGGRPSK KSERFISKRM INMPIKTKIV LYLWNKGT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NQB50.0A0A0K9NQB5_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-30FAR1-related sequence 5