PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma81g00370.1
Common NameZOSMA_81G00370
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRF
Protein Properties Length: 281aa    MW: 31905.6 Da    PI: 8.4062
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma81g00370.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.22.9e-23171214144
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                      d+ep+rCrRtDGKkWRCsr++  g k+CErH+hr+r rsrk +e
  Zosma81g00370.1 171 DPEPWRCRRTDGKKWRCSREAQLGRKYCERHVHRSRARSRKLVE 214
                      79***************************************998 PP
2QLQ53.48e-1986120236
              QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                      +F++aQ+q+L+ Q+l+yKy++a++ vP+eL+++i+
  Zosma81g00370.1  86 YFSDAQWQELELQALIYKYMLAGASVPMELILPIK 120
                      7********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.3E-985121IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.60686121IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-1386119IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.182171215IPR014977WRC domain
PfamPF088791.5E-19172214IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MPPHQAITVR EKGEEYLFME DFRQQQQRFH NQQLFSYSDH HHHDNPPLFP QQQHQHDSFS  60
NTAAAESYPP DISAPCGERF LRAGEYFSDA QWQELELQAL IYKYMLAGAS VPMELILPIK  120
TSLQKLTTTA TATTNASSSC FPSYHHQTHR QLQTTMLQEV SYLGRCNNDV DPEPWRCRRT  180
DGKKWRCSRE AQLGRKYCER HVHRSRARSR KLVETIPKTA PKTTPSPPTA VDCGDGGDQN  240
HQNQVLKQWS SSMRGGGPLA EALRSSPSSC STTTLLRTAH *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018679471.11e-44PREDICTED: growth-regulating factor 3
RefseqXP_018679472.11e-44PREDICTED: growth-regulating factor 3
RefseqXP_018679473.11e-44PREDICTED: growth-regulating factor 3
RefseqXP_018679474.11e-44PREDICTED: growth-regulating factor 3
RefseqXP_018679475.11e-44PREDICTED: growth-regulating factor 3
RefseqXP_018679476.11e-44PREDICTED: growth-regulating factor 3
RefseqXP_018679477.11e-44PREDICTED: growth-regulating factor 3
RefseqXP_018679478.11e-44PREDICTED: growth-regulating factor 3
TrEMBLA0A0K9NM060.0A0A0K9NM06_ZOSMR; Uncharacterized protein
STRINGAquca_122_00004.11e-43(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2546144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.14e-40growth-regulating factor 3