PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma81g00520.1
Common NameZOSMA_81G00520
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 180aa    MW: 19819.1 Da    PI: 6.9757
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma81g00520.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-1986136256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg++ ta+ Aa a++aa+++++g+
  Zosma81g00520.1  86 RYRGVRQRP-WGKWAAEIRDP-----HkaTRVWLGTYNTAKAAALAYDAAALRFRGN 136
                      7********.**********7.....337*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-1386135IPR001471AP2/ERF domain
SMARTSM003804.7E-3586149IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2286145IPR016177DNA-binding domain
CDDcd000184.73E-2286145No hitNo description
Gene3DG3DSA:3.30.730.103.8E-3286144IPR001471AP2/ERF domain
PROSITE profilePS5103224.57986143IPR001471AP2/ERF domain
PRINTSPR003672.9E-148798IPR001471AP2/ERF domain
PRINTSPR003672.9E-14125145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MENANDDPAS SSGELFISED SDRHPAMVML SEHNKALEMS IIVSTLTHVI AGDRQQIGDV  60
FIPPVLSSPS TSVVSHEATE NNSSRRYRGV RQRPWGKWAA EIRDPHKATR VWLGTYNTAK  120
AAALAYDAAA LRFRGNKAKL NFPENVHLVH HQPPLPPSDS FFPTNMSTDS TANNINDRM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2387147667ATERF1
3gcc_A4e-2387147667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489632.12e-37PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH544e-34EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A0K9NM201e-130A0A0K9NM20_ZOSMR; Ethylene-responsive transcription factor
STRINGXP_004503984.11e-35(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.12e-28related to AP2 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]