PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma81g00960.1
Common NameZOSMA_81G00960
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 447aa    MW: 49965.9 Da    PI: 4.8711
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma81g00960.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-19160210256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +y+G+r+++ +g+W+AeIrdps+     r++lg+f taeeAa+a++  +++++ge
  Zosma81g00960.1 160 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFNTAEEAARAYDVEARRIRGE 210
                      69*******.**********965...4*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-40160223IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-22160218IPR016177DNA-binding domain
CDDcd000182.63E-34160218No hitNo description
Gene3DG3DSA:3.30.730.109.0E-33160218IPR001471AP2/ERF domain
PROSITE profilePS5103224.118160217IPR001471AP2/ERF domain
PfamPF008471.0E-11161210IPR001471AP2/ERF domain
PRINTSPR003671.5E-11161172IPR001471AP2/ERF domain
PRINTSPR003671.5E-11183199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MKRHHSINNT HHTHYTTDFY PFSNLFASSR RHFAKMCGGA ILTDFIRIPL RSSSRRLTDE  60
LLFSDLSVYG DTVDGSKQKR KIDNSVSVGT DDADFEADFM RFEDDSEVGL IQLTDAKPFS  120
SPLETAAPFC RKGALATQTP LASVPKVTGN RSNKRERKNQ YRGIRQRPWG KWAAEIRDPS  180
KGVRVWLGTF NTAEEAARAY DVEARRIRGE KAKLNFPEET SSVAGQNPVA KPAAKKIAKT  240
VIPSEDLIPK ENLDYLNDMD QKLVTKPTAK KILKKAIPSE KLSTKEENLD YLNHLDLDFY  300
YSFAPNEDNE QPILPSAFPN SEQGSNSYGY SGLVVESEAK TPEITSVLND SVREMLFMDD  360
EAPQKKLKNN SGVAVAADQN GNLMNMSEDL TFDPYMFLDI PFLGGNNTDG SVESMLSGDD  420
LTEDNNSNPI DLWSFDDIPM IEDLLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22160217260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-22157222268ATERF1
3gcc_A1e-22157222268ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NMP10.0A0A0K9NMP1_ZOSMR; Ethylene-responsive transcription factor 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.25e-42related to AP2 12