PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma81g01210.1

Common Name

ZOSMA_81G01210

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 350aa MW: 38521.2 Da PI: 9.6496

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma81g01210.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H++ H Zosma81g01210.1 129 FECHYCRRNFPTSQALGGHQNAH 151 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.38E-6	126	156	No hit	No description
PROSITE profile	PS50157	11.323	129	156	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.3E-5	129	153	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	131	151	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MLQLAATMSV SSIIINQITL FRFFFNHIYT SFFLPIYLLP GVEMTERAET RDFISVDAFS 60 QLPFIRPPPA MDKEKEKSES EDYYSSGIRI FGQQIDSKEG TIEKTASAYS GGGGGARTRA 120 ASEENSRKFE CHYCRRNFPT SQALGGHQNA HKRERQNAKR AHLQTALAAA SHNQYHHKVI 180 TEAHLKSFAN NYHRSVGPVG PILSSPPSSR FSIDHAFDFH STPYYSPWRG GDMSGASTFG 240 SRNYTVLPRL YGGSGSTLSP LQPMNGNPTG LWRSPIPTQG SREIQIPLHR NRSMSALPLF 300 GAGAGTTALT DSPAPSTLSP LPPPQIHPFA YDPKTSAVKD HHFSLDLHL*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MLQLAATMSV SSIIINQITL FRFFFNHIYT SFFLPIYLLP GVEMTERAET RDFISVDAFS  60
QLPFIRPPPA MDKEKEKSES EDYYSSGIRI FGQQIDSKEG TIEKTASAYS GGGGGARTRA  120
ASEENSRKFE CHYCRRNFPT SQALGGHQNA HKRERQNAKR AHLQTALAAA SHNQYHHKVI  180
TEAHLKSFAN NYHRSVGPVG PILSSPPSSR FSIDHAFDFH STPYYSPWRG GDMSGASTFG  240
SRNYTVLPRL YGGSGSTLSP LQPMNGNPTG LWRSPIPTQG SREIQIPLHR NRSMSALPLF  300
GAGAGTTALT DSPAPSTLSP LPPPQIHPFA YDPKTSAVKD HHFSLDLHL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NPI5	0.0	A0A0K9NPI5_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP834	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58070.1	2e-22	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Zosma81g01210.1