PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma82g00130.1
Common NameZOSMA_82G00130
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 318aa    MW: 37341.7 Da    PI: 9.6847
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma82g00130.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.1e-1735124196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+     l s+rl ++  f+++++ + + + t +++ +sg  W+v++ ++  ++++++ +GWkeF+k++ L+ g f+vF+++g+++f   +
  Zosma82g00130.1  35 FFKVF--LPDLCSHRLGISPAFIKHID-DRNFPWTCSMKGPSGHIWNVEV-VSEEKDGVFFDRGWKEFAKDHSLELGNFMVFEYIGDRRF--SM 122
                      78888..8899999*********7775.457999****************.677778899**************************9888..44 PP

                      EE CS
               B3  95 kv 96 
                       +
  Zosma82g00130.1 123 LL 124
                      44 PP
2B361.11.8e-19201288497
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         +sd   ++ +++pk+fa+++   ++ s++ +l+++ g+ ++v++ y++k+++y +t+GW+ Fv +n+++e D +vF+l+++++f  ++ ++
  Zosma82g00130.1 201 SIRRSDIYLHNKMYIPKQFAAHYL--PNASVDFILQNQAGKLYNVRV-YWNKKDQY-ITSGWRVFVFENNIEEDDACVFELVKERQF--NIYIH 288
                      566788889999********8885..34789****************.88888775.899*********************998888..55544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.0E-1932130IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-1833130IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-1733126No hitNo description
PfamPF023622.8E-1435123IPR003340B3 DNA binding domain
SMARTSM010191.2E-1135128IPR003340B3 DNA binding domain
PROSITE profilePS5086312.04169128IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-25190289IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-24191289IPR015300DNA-binding pseudobarrel domain
CDDcd100178.26E-20196289No hitNo description
SMARTSM010191.1E-18198291IPR003340B3 DNA binding domain
PROSITE profilePS5086313.606198291IPR003340B3 DNA binding domain
PfamPF023625.8E-18202288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGFYRELQKT MRNKKSETSS STVTENVRRT VFPRFFKVFL PDLCSHRLGI SPAFIKHIDD  60
RNFPWTCSMK GPSGHIWNVE VVSEEKDGVF FDRGWKEFAK DHSLELGNFM VFEYIGDRRF  120
SMLLFDSSAC EKVEALSAKP SGCSKEVVLS SLKRREDRPN FRYLNRRVLL SHRRSVTSSE  180
IRRAMEAARS FKSDFPFFIR SIRRSDIYLH NKMYIPKQFA AHYLPNASVD FILQNQAGKL  240
YNVRVYWNKK DQYITSGWRV FVFENNIEED DACVFELVKE RQFNIYIHRV VKELAPPTWA  300
IEREDSSAIK TMIEISE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1717128322133B3 domain-containing transcription factor VRN1
4i1k_B5e-1717128322133B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NLT10.0A0A0K9NLT1_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-21B3 family protein