PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma82g00440.1
Common NameZOSMA_215G00450
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 63aa    MW: 6978.92 Da    PI: 11.0563
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma82g00440.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.17.8e-10262564
             FAR1  5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCka 64
                      YA ++GF++r+ ++k +  ++e++ r+f Csk+g++ ++++    +e+++r+  ++r gC a
  Zosma82g00440.1  2 GYAGNIGFNIRMGSTKMN--DHEMVGRRFLCSKQGYALSTDTGnnvNERKHRRIRNSRSGCLA 62
                     5************98887..9999************998887766666666677788999965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-7262IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MGYAGNIGFN IRMGSTKMND HEMVGRRFLC SKQGYALSTD TGNNVNERKH RRIRNSRSGC  60
LA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NNT08e-38A0A0K9NNT0_ZOSMR; Uncharacterized protein
TrEMBLA0A0K9PME42e-36A0A0K9PME4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494