PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma82g00860.1
Common NameZOSMA_82G00860
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 222aa    MW: 24924.2 Da    PI: 9.2572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma82g00860.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.1e-17102151255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ + +W+AeIrdp+    r  r++lg+f tae Aa a+++a+  ++g
  Zosma82g00860.1 102 NYRGVRQRP-WDKWAAEIRDPR----RaVRVWLGTFETAEAAALAYDRAAITFRG 151
                      59*******.**********82....48**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.48E-21101159No hitNo description
SuperFamilySSF541711.44E-21102160IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-31102159IPR001471AP2/ERF domain
SMARTSM003803.3E-33102165IPR001471AP2/ERF domain
PfamPF008477.0E-12102151IPR001471AP2/ERF domain
PROSITE profilePS5103223.894102159IPR001471AP2/ERF domain
PRINTSPR003671.8E-10103114IPR001471AP2/ERF domain
PRINTSPR003671.8E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MVGKNNNFDR ISEAVPPVFR SRLSRDQENS IMVSTLVYIM SGHTTTPPVI PTTANSIAAE  60
LCSRCGISGC IGCEFFVGNN ELDFSPKNSK KIKTIVKRKK KNYRGVRQRP WDKWAAEIRD  120
PRRAVRVWLG TFETAEAAAL AYDRAAITFR GAKAKLNFPF GVDITVDQRN GAFRNANDGT  180
VCSHSPDNKN QPKQEEKEET IFYNGFWEGL HDLMNLDDFN L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2499163267ATERF1
3gcc_A4e-2499163267ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SZ062e-31EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A0K9NP691e-165A0A0K9NP69_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.12e-24related to AP2 6
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]