PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma83g00060.1
Common NameZOSMA_83G00060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 209aa    MW: 23685.4 Da    PI: 10.5471
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma83g00060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.7e-2063112356
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +k+++ge
  Zosma83g00060.1  63 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDSEAKRIRGE 112
                      9*******.**********954...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.77562119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3262120IPR001471AP2/ERF domain
CDDcd000186.81E-3562119No hitNo description
SMARTSM003802.8E-3762125IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2262120IPR016177DNA-binding domain
PfamPF008473.5E-1363112IPR001471AP2/ERF domain
PRINTSPR003674.3E-126374IPR001471AP2/ERF domain
PRINTSPR003674.3E-1285101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MTLSMPTSMP TLKPTSRISM MTQMKTSLLL LNPAFATRSE ISATVTVLKY GNTGRARKRK  60
NIYRGIRQRP WGKWAAEIRD PRKGVRVWLG TFNTAEEAAR AYDSEAKRIR GEKAKLNFPK  120
TLPFAVSKLN RKRKSLDNMM TCNSQHNKKT EKLQKNSDEV VASAVPIFFD ETETVNAVKL  180
LSDEDEISSY EHPYMMMIMP CPEESSSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2363119663ATERF1
3gcc_A7e-2363119663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NM141e-153A0A0K9NM14_ZOSMR; Uncharacterized protein
STRINGXP_008380747.11e-37(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-38ethylene-responsive element binding protein