PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma83g00080.1
Common NameZOSMA_83G00080
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 221aa    MW: 24500.8 Da    PI: 5.8462
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma83g00080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-181768156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     s y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++ge
  Zosma83g00080.1 17 STYHGVRMRS-WGKWVSEIREPKK---NSRIWLGTFRTAEMAARAHDVAARSIKGE 68
                     569****998.**********976...4************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.65E-311777No hitNo description
SuperFamilySSF541716.47E-211776IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-311876IPR001471AP2/ERF domain
PROSITE profilePS5103221.8651875IPR001471AP2/ERF domain
SMARTSM003801.1E-331881IPR001471AP2/ERF domain
PRINTSPR003676.6E-101930IPR001471AP2/ERF domain
PfamPF008476.7E-111968IPR001471AP2/ERF domain
PRINTSPR003676.6E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAGKSKPATP RSDKKSSTYH GVRMRSWGKW VSEIREPKKN SRIWLGTFRT AEMAARAHDV  60
AARSIKGESA ILNFPDLIAS LPYPVSLSPR DVRAAAAKAA MMDPSPTLLL KDDLVEEEEL  120
GQIIELPRID HVDLMFEHLP SSSSSESCSS NEFLFSIDHH TTTCTWMETE IMRGHREFGG  180
VGFGLDNQNG LLPLPEAILP TNDFGFETPS VWDHCLSKFD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1717751372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421285.12e-46PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9M0808e-45ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A0K9NNU91e-162A0A0K9NNU9_ZOSMR; Dehydration-responsive element-binding protein 3
STRINGGSMUA_Achr10P14070_0015e-46(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.14e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]