PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma83g00090.1
Common NameZOSMA_83G00090
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 240aa    MW: 26393.1 Da    PI: 5.7028
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma83g00090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-184899156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     s y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+ +++ge
  Zosma83g00090.1 48 SNYHGVRMRS-WGKWVSEIREPKK---KSRIWLGTFATAEMAARAHDVAACSIKGE 99
                     579****998.**********854...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.46E-3348108No hitNo description
SuperFamilySSF541711.96E-2048107IPR016177DNA-binding domain
PfamPF008477.6E-124999IPR001471AP2/ERF domain
SMARTSM003807.0E-3649112IPR001471AP2/ERF domain
PROSITE profilePS5103221.77349106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-3149107IPR001471AP2/ERF domain
PRINTSPR003677.5E-105061IPR001471AP2/ERF domain
PRINTSPR003677.5E-107288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MTSPELLPPT ELIHSAEPKK MTAMKKKVKK KKNATAVPST SSDKEAMSNY HGVRMRSWGK  60
WVSEIREPKK KSRIWLGTFA TAEMAARAHD VAACSIKGES AVVNFPELIG FLPRPVSLSP  120
RDVRIAAAKA AMMDPITGFD GLCTTEEELG EIVKLPRIDT VDSLFESGAG SSSESCSSNE  180
FLLSPLDMSM STEQHHVDDW TDPWSIGFGL RLGDFFSNED DDLIMPANSP RYSLWDRPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16481061372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00467DAPTransfer from AT4G32800Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NLM51e-175A0A0K9NLM5_ZOSMR; Dehydration-responsive element-binding protein 3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.17e-48ERF family protein