PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma83g00210.1
Common NameZOSMA_83G00210
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ZF-HD
Protein Properties Length: 258aa    MW: 28841.4 Da    PI: 6.786
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma83g00210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer92.53.6e-2956111460
      ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                      ++Y+eClkNhAas+Gg+a+DGCgEfm+  g egt++a++C+AC CHRnFHR+ ve e
  Zosma83g00210.1  56 TKYRECLKNHAASIGGNATDGCGEFMAG-GGEGTMEAFQCSACRCHRNFHRKVVEGE 111
                      78*************************9.8899*******************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.4E-2656108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-1157111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-2657106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.06558107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.0E-29188256IPR009057Homeodomain-like
SuperFamilySSF466892.19E-18189255IPR009057Homeodomain-like
TIGRFAMsTIGR015654.5E-27194250IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDVSIHEEGE DTKYHVGDYP TSNGLPLCIT DENNNNNTNN NNNNEEEEEV VEVVATKYRE  60
CLKNHAASIG GNATDGCGEF MAGGGEGTME AFQCSACRCH RNFHRKVVEG ENTLDLYHNF  120
KGRNMMVPKG VMISGSADHH LYGGYNSTHN SLMPISSPPH YMIMPLGAMQ TSESDDMEGV  180
AVGGMPRPQP LMTKKRYRTK FTSDQKEKML GFAERAGWKL QKQEENVVQN FCQEIGVKRR  240
VLKVWMHNNK HNLAKKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A3e-241942521775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421143.13e-96PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotQ9M9S07e-63ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A0K9NLN40.0A0A0K9NLN4_ZOSMR; Zinc finger-homeodomain protein 1
STRINGXP_008808961.16e-94(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.25e-52homeobox protein 31