PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma84g00210.1

Common Name

ZOSMA_84G00210

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

LBD

Protein Properties

Length: 218aa MW: 23963.5 Da PI: 9.7179

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma84g00210.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.3	3.6e-40	55	154	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+C+++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r d++sslvyeA++r+rdPvyG++gv+ +lq+q++ ++ el Zosma84g00210.1 55 PCAACKLLRRRCTDQCPFSPYFSPQDPNKFASVHKVFGASNVSKMLMDVPETQRFDTASSLVYEANIRLRDPVYGCMGVVASLQRQVQVMEMEL 148 7********************************************************************************************* PP DUF260 95 allkee 100 ++l+++ Zosma84g00210.1 149 NKLRTQ 154 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.746	54	155	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-40	55	152	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MMLGCKSSAT ATTNFISSAY RDSRHDDGSS KRLKRDLEAP PSSLLQGGVL NTITPCAACK 60 LLRRRCTDQC PFSPYFSPQD PNKFASVHKV FGASNVSKML MDVPETQRFD TASSLVYEAN 120 IRLRDPVYGC MGVVASLQRQ VQVMEMELNK LRTQFMKMRY RYTNNGSTVL PTFHAPMGVA 180 ACRAQSNMPM PTSLSSLPPP PQTLNGNGPQ FSTFGFN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-41	54	175	10	131	LOB family transfactor Ramosa2.1
5ly0_B	9e-41	54	175	10	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023925198.1	5e-66	LOB domain-containing protein 15
Swissprot	Q9AT61	4e-57	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A0K9NLD5	1e-160	A0A0K9NLD5_ZOSMR; Putative LOB domain-containing protein
STRING	XP_006486213.1	1e-64	(Citrus sinensis)
STRING	XP_006435864.1	1e-64	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	2e-59	LOB domain-containing protein 13

Link Out ? help Back to Top
Phytozome	Zosma84g00210.1

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]