PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma853g00020.1
Common NameZOSMA_853G00020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 75aa    MW: 8580.11 Da    PI: 9.0281
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma853g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-071171026
                      GGTS--TTTTT-SS-SS CS
           zf-CCCH 10 artGtCkyGdrCkFaHg 26
                      ++tG C y ++C+F+H+
  Zosma853g00020.1  1 MKTGNCGYNATCRFNHP 17
                      89**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006427.7E-5117IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.404119IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MKTGNCGYNA TCRFNHPSDK RKVKFMELEN TMEDKELVAY DKFTPKVECK VIFLPPSCFA  60
KCILKSQGAY FKFI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NLA87e-48A0A0K9NLA8_ZOSMR; Uncharacterized protein