PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma85g00170.1
Common NameZOSMA_85G00170
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 110aa    MW: 12330.2 Da    PI: 9.0259
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma85g00170.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.5e-0836761454
                     HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     d++N+ +++L++llP+a + +  + s +  L+++++YIksL
  Zosma85g00170.1 36 DEVNELISKLQSLLPEARRHNLCRASTSKLLKETCKYIKSL 76
                     689*************8899999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.1752276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-83696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-103696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-53676IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MTSVTIPCSF PTRPSTLFTC LLGKRRRSSG SRITEDEVNE LISKLQSLLP EARRHNLCRA  60
STSKLLKETC KYIKSLHREV DDLSDRLSDL MSTMDTNSEQ AQIIKSLLS*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937075.13e-38transcription factor ILI5
RefseqXP_020697710.13e-38transcription factor ILI5
SwissprotA2X9L81e-32ILI5_ORYSI; Transcription factor ILI5
SwissprotQ6YUX01e-32ILI5_ORYSJ; Transcription factor ILI5
TrEMBLA0A0K9NN891e-71A0A0K9NN89_ZOSMR; DNA binding protein
STRINGGSMUA_Achr8P17980_0014e-37(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.13e-17bHLH family protein