PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma85g00390.1
Common NameZOSMA_85G00390
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 401aa    MW: 42029.2 Da    PI: 7.3113
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma85g00390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.57.6e-18292326135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Zosma85g00390.1 292 CTHCSSEKTPQWRTGPLGPKTLCNACGVRFKSGRL 326
                      *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-16286336IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-13290324IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.253290322IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-14290349No hitNo description
CDDcd002023.42E-13291338No hitNo description
PROSITE patternPS003440292317IPR000679Zinc finger, GATA-type
PfamPF003201.3E-15292326IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGPELEMGMG FGRETIGNSN NAYLYGLQPS SVTETLQIDD LLDFSTTQEG GGFETGGGGD  60
NGGGLQGGGG HHFQQMMPMQ YASTGNINSG TGNNVNATSA GFAGAGNCGG LGGVGINGGF  120
GTGPDLLPAF PEDLYMPSEE TAELEWLSKF VEDSFSDLPF PSPTPTMGNF SNVNPPVTNT  180
ADENNRNNNG NSRTIGNLHN HNSVPGRARS KRSRAPGPVP STHLAAPSVT TTWSSLPPPQ  240
LCASTSSSSS SSSETKQRGG GGTHGVKKKE STMGVGGPAM EKGGGEGGVR RCTHCSSEKT  300
PQWRTGPLGP KTLCNACGVR FKSGRLVPEY RPAASPTFVL TQHSNSHRKV VELRRQKELV  360
YRHQAQNHLQ NNRETSPSTT NGTTASATRP DLLLRDYEVC *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NN160.0A0A0K9NN16_ZOSMR; GATA transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.16e-56GATA transcription factor 4