PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma85g00880.1
Common NameZOSMA_85G00880
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family LSD
Protein Properties Length: 145aa    MW: 15099.5 Da    PI: 7.9177
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma85g00880.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.32.6e-132751125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr+lL YP GA+sV+Ca+C++V
  Zosma85g00880.1 27 CSGCRNLLLYPNGATSVCCAVCNAV 51
                     ************************9 PP
2zf-LSD146.55.8e-156690125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     CggC+tlL+Y rGA+sV+C++C+t+
  Zosma85g00880.1 66 CGGCHTLLMYIRGATSVQCSCCHTI 90
                     ***********************97 PP
3zf-LSD141.91.7e-13104128125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+Cr lL+Y +GA+sV+Ca+C++V
  Zosma85g00880.1 104 CGNCRMLLMYQYGARSVKCAVCNFV 128
                      ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.104.4E-421125No hitNo description
TIGRFAMsTIGR010533.7E-132453IPR005735Zinc finger, LSD1-type
SuperFamilySSF486951.0E-427125IPR011031Multihaem cytochrome
PfamPF069434.4E-112751IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.2E-146392IPR005735Zinc finger, LSD1-type
PfamPF069439.6E-136690IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.9E-12101131IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12104128IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MPVPLAPYPS PPVPPTQPNG SQTQLVCSGC RNLLLYPNGA TSVCCAVCNA VTPVPPPGTE  60
NAQLLCGGCH TLLMYIRGAT SVQCSCCHTI NLASEANQVA HVNCGNCRML LMYQYGARSV  120
KCAVCNFVTS VGAAPITDPQ KFNQ*
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269986.12e-85PREDICTED: protein LSD1
RefseqXP_010269987.12e-85PREDICTED: protein LSD1
RefseqXP_010269988.12e-85PREDICTED: protein LSD1
SwissprotQ0J7V99e-77LSD1_ORYSJ; Protein LSD1
TrEMBLA0A0K9NL782e-98A0A0K9NL78_ZOSMR; Protein LSD1
STRINGXP_010269986.16e-85(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.12e-74lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]