PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma86g00080.1
Common NameZOSMA_86G00080
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 254aa    MW: 28583.3 Da    PI: 4.3156
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma86g00080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-10751121355
                      HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R+++N+++  Lr+++P+      +K++K++iL+ A+ YI++Lq
  Zosma86g00080.1  75 RRNLNQRLYSLRSVVPNI-----TKMNKSSILTDAIAYIQELQ 112
                      789**************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.79862111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-970117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.73E-975116No hitNo description
Gene3DG3DSA:4.10.280.101.4E-1375125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-875112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-1375128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDENMDEYNL YWETKMFLEV EELYGWGLES VLAECSSSGL IESQEEGLNS AAAFSSSSKS  60
FSSAKPNNKM IVENRRNLNQ RLYSLRSVVP NITKMNKSSI LTDAIAYIQE LQEQERSLME  120
ETSQLGNMED PTDHESCQTT NHDKVEYDED MLRIKDKARC AADNIQVKVS GVGETTLVIS  180
ITCSKKKDMI LKLCQVLPSL NLKIITANII SFSGELFHTI IIEGDEVDAR WLEEKIEMSF  240
AEADKIQPCL LQG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NKS00.0A0A0K9NKS0_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.18e-43bHLH family protein