PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma86g00400.1
Common NameZOSMA_86G00400
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 246aa    MW: 27876.3 Da    PI: 5.4631
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma86g00400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-1875128356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++++q+e Le+ F  +r++++ ++ +LA++ gL+ +qV vWFqNrR+++k
  Zosma86g00400.1  75 KKRRLSEDQVEFLEKSFMADRKLDTGRKIKLAEEAGLDPKQVAVWFQNRRTRWK 128
                      56689************************************************9 PP
2HD-ZIP_I/II104.39.5e-3475166293
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      kkrrls++qv++LE+sF +++kL++ rK +la+e gl+p+qvavWFqnrR R+k k++E+dy++ ++ +d+   + + Le+e  +L+++l+e
  Zosma86g00400.1  75 KKRRLSEDQVEFLEKSFMADRKLDTGRKIKLAEEAGLDPKQVAVWFQNRRTRWKCKKMEEDYNKFRSLHDTDIVQIHLLEAEAMRLKQQLSE 166
                      9****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.3970130IPR001356Homeobox domain
SMARTSM003891.1E-1573134IPR001356Homeobox domain
SuperFamilySSF466891.58E-1775138IPR009057Homeodomain-like
CDDcd000863.00E-1575128No hitNo description
PfamPF000466.3E-1675128IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1877137IPR009057Homeodomain-like
PROSITE patternPS000270105128IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLLVYIIHSI FCPLIYYYYY YYHSTQKTLA MNAGVEMTET DTSMLFSSIF DVEMESKVKG  60
RRRKKATREE GEEAKKRRLS EDQVEFLEKS FMADRKLDTG RKIKLAEEAG LDPKQVAVWF  120
QNRRTRWKCK KMEEDYNKFR SLHDTDIVQI HLLEAEAMRL KQQLSEAQKE INDLSYKYLC  180
GGGGGGGGGG GAGGEFSSSA STTAYSMNEG YSAAWGEFEQ AAGGGMDGYN NNYIPDDMTA  240
DFYCF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16277RKKATREEGEEAKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotA2YN172e-33HOX14_ORYSI; Homeobox-leucine zipper protein HOX14
SwissprotQ7XI852e-33HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBLA0A0K9NN340.0A0A0K9NN34_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.12e-32homeobox 53
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]