PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma86g00420.1

Common Name

ZOSMA_86G00420

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 478aa MW: 51005.8 Da PI: 9.9533

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma86g00420.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.3	6.5e-06	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Zosma86g00420.1 69 FVCEICNKGFQREQNLQLHRRGH 91 89*******************88 PP
2	zf-C2H2	12.8	0.00035	145	167	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Zosma86g00420.1 145 WKCEKCSKKYAVQSDWKAHSKTC 167 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.97E-7	68	91	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.9E-6	68	91	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.074	69	91	IPR007087	Zinc finger, C2H2
Pfam	PF12171	2.5E-5	69	91	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0034	69	91	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	71	91	IPR007087	Zinc finger, C2H2
SMART	SM00355	33	110	140	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.7E-5	133	166	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.97E-7	140	165	No hit	No description
SMART	SM00355	140	145	165	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MPVEIDSSSA MTVVSNSISG DASVSSSSGQ KPQSPVVAAK RKRNLPGMPD PDAEVVTLSP 60 KSLTATNRFV CEICNKGFQR EQNLQLHRRG HNLPWKLRQR TGNEPKKRVY VCPVPGCVHH 120 DPARALGDLT GIKKHYFRKH GEKKWKCEKC SKKYAVQSDW KAHSKTCGTR EYRCDCGTLF 180 SRRDSFITHR AFCDALTHER TAVENADEVK ESSPPSASAS PISPMKKKIF SKKSEKASKL 240 QQEFESTTTS TTSPSPSSSS PMTKSPTTTV TATTLAGTSN TTTTSLFTTL FAPLTNHHTT 300 TFTDLISSFS PRSYIPVVPP SSSSSPHMSA TALLQKAAQI GATSTTGSLL RGLGLGLSTS 360 TSSSSLMPPP PPLILHHPQK QEQEEQISVG LSPRLGLGLP CYDELGHHNA TEMMMSSSPL 420 FGQRAPTLDF LGLGMGVVGR GSAHVGGGLP PLLTSISGGF EMATSGQIGS GKPTGNV*

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MPVEIDSSSA MTVVSNSISG DASVSSSSGQ KPQSPVVAAK RKRNLPGMPD PDAEVVTLSP  60
KSLTATNRFV CEICNKGFQR EQNLQLHRRG HNLPWKLRQR TGNEPKKRVY VCPVPGCVHH  120
DPARALGDLT GIKKHYFRKH GEKKWKCEKC SKKYAVQSDW KAHSKTCGTR EYRCDCGTLF  180
SRRDSFITHR AFCDALTHER TAVENADEVK ESSPPSASAS PISPMKKKIF SKKSEKASKL  240
QQEFESTTTS TTSPSPSSSS PMTKSPTTTV TATTLAGTSN TTTTSLFTTL FAPLTNHHTT  300
TFTDLISSFS PRSYIPVVPP SSSSSPHMSA TALLQKAAQI GATSTTGSLL RGLGLGLSTS  360
TSSSSLMPPP PPLILHHPQK QEQEEQISVG LSPRLGLGLP CYDELGHHNA TEMMMSSSPL  420
FGQRAPTLDF LGLGMGVVGR GSAHVGGGLP PLLTSISGGF EMATSGQIGS GKPTGNV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-35	141	199	3	61	Zinc finger protein JACKDAW
5b3h_F	2e-35	141	199	3	61	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006280348.1	1e-147	protein indeterminate-domain 1
Swissprot	Q9LVQ7	1e-138	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A0K9NMV0	0.0	A0A0K9NMV0_ZOSMR; Putative Zinc finger protein
STRING	XP_006280348.1	1e-146	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	3e-94	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Zosma86g00420.1

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]