PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma86g00480.1
Common NameZOSMA_86G00480
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 577aa    MW: 63779.1 Da    PI: 4.7319
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma86g00480.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.54.7e-1032115752373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       + L++cA+ +   d + a + L r++e + ++gdp++R+ +yf +AL + l++++ ++  + pps +s  + +e +  +k++++++P+ kf+h
  Zosma86g00480.1 211 LQSLVDCARLIGV-DPQVAAKSLLRVKESSFKHGDPTERVSFYFSKALYQCLSHESIRINPQSPPSISS-PSPDEFTLCYKTLNDACPYTKFAH 302
                      688******9987.8888889999******************************777777666666555.458899999*************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      ltaNqaIle++e+++r+HiiDf+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ spe  + e+  + g  L+ fA+ l+++fef + v + +++
  Zosma86g00480.1 303 LTANQAILESTESSSRIHIIDFGIVQGVQWAALLQALATRSTGKPdKIRISGIPSPE--HPESSATSGAHLEAFAKLLNLDFEFIP-VLSPVQE 393
                      *****************************************76666*********88..99999999*******************.79***** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                      l+ ++++++p+E+++Vn++++lh lld+s ++ +   ++L+l kslsP+vv++ e e++ n+  F++r+++a+ +ysa f+sl++ l res er
  Zosma86g00480.1 394 LTKSSFDIHPDESIVVNFMFHLHLLLDDSSTVVE---RLLRLSKSLSPTVVTLGEFELNSNNIGFAQRVANAIGFYSAAFESLDEALDRESPER 484
                      **************************99999999...9******************************************************** PP

             GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv.lgWkdrpLvsvSaW 373
                        vE e+lg++i + v +   +rr+r+e++++W  ++e++GF++vpls++a +qak ll +++s+ y + e+s  ++ lgW +rpL+svS+W
  Zosma86g00480.1 485 ERVECEVLGNRILSTVVKVVGKRRMRMEEKKNWTVQMERCGFRKVPLSHYALSQAKILLWNYSSR-YCLVESSPGFLsLGWDNRPLLSVSSW 575
                      ***************************************************************99.666666665555************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.922184556IPR005202Transcription factor GRAS
PfamPF035141.6E-100211575IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIQ QQQKHRQQQQ QEHHQQQQMN AVMNPFGFQS PWTGNNNFPF  60
SDSTGFYDPY QTEQVAETAV TEMMKDDGGF QLSGYGSAVG RDEFDSDEWM ETLITGDSAG  120
VEVDFPMELP GMISETFVPC SPSSSRVNGG LVLDLPLPSE NPCAVPCSSS PPLLDIHDLS  180
PLPPPQIKDV VLSELSPVPP SDVVDTSPPL LQSLVDCARL IGVDPQVAAK SLLRVKESSF  240
KHGDPTERVS FYFSKALYQC LSHESIRINP QSPPSISSPS PDEFTLCYKT LNDACPYTKF  300
AHLTANQAIL ESTESSSRIH IIDFGIVQGV QWAALLQALA TRSTGKPDKI RISGIPSPEH  360
PESSATSGAH LEAFAKLLNL DFEFIPVLSP VQELTKSSFD IHPDESIVVN FMFHLHLLLD  420
DSSTVVERLL RLSKSLSPTV VTLGEFELNS NNIGFAQRVA NAIGFYSAAF ESLDEALDRE  480
SPERERVECE VLGNRILSTV VKVVGKRRMR MEEKKNWTVQ MERCGFRKVP LSHYALSQAK  540
ILLWNYSSRY CLVESSPGFL SLGWDNRPLL SVSSWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1362075761375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075848.11e-159scarecrow-like protein 4
SwissprotQ9FL031e-147SCL4_ARATH; Scarecrow-like protein 4
TrEMBLA0A0K9NMV30.0A0A0K9NMV3_ZOSMR; GRAS family transcription factor
STRINGXP_008790358.11e-157(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.11e-120GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]