PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma86g00630.1
Common NameZOSMA_86G00630
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 89aa    MW: 9894.56 Da    PI: 10.5016
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma86g00630.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1416.4e-131284270
             FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkk 70
                      Y +YA + GF vrk ++k+sk+     k+t+vC keg+++ +          +++ r   ++rtgCka l++k 
  Zosma86g00630.1 12 IYYAYAGQKGFCVRKGSTKHSKK--GLRKKTYVCAKEGTSKAKIPIvenpsiVSTKPRYIRNSRTGCKALLTIKI 84
                     799****************9944..47************99987667889988888899999**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-101284IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MTFDSIKEAE DIYYAYAGQK GFCVRKGSTK HSKKGLRKKT YVCAKEGTSK AKIPIVENPS  60
IVSTKPRYIR NSRTGCKALL TIKIYGDR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NMW64e-57A0A0K9NMW6_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.17e-08FAR1-related sequence 12