PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma873g00020.1

Common Name

ZOSMA_873G00020

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 129aa MW: 14796.1 Da PI: 11.5371

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma873g00020.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.2	5.6e-18	11	100	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA ++GFsvrks+++++ ++ it+r +vCsk+gk+++ + + k++r+ + +t+C a+++ + d+ w +++ HnH l+ Zosma873g00020.1 11 NFYYRYAGRTGFSVRKSTTSSN--SQGITRRSLVCSKQGKSNSIIPTssdSLKKKRKIRNPKTDCLARITFAVK-DNIWFAPICNTSHNHLLT 100 6*************987766..6669********997544434467888888999*******99.9************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.4E-16	11	100	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MSFKTLEDAE NFYYRYAGRT GFSVRKSTTS SNSQGITRRS LVCSKQGKSN SIIPTSSDSL 60 KKKRKIRNPK TDCLARITFA VKDNIWFAPI CNTSHNHLLT TPRKRRFLTV NRKIKLHTRN 120 IIHDLKVH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NMZ2	8e-89	A0A0K9NMZ2_ZOSMR; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	2e-10	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Zosma873g00020.1