PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma87g00060.1
Common NameZOSMA_87G00060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 700aa    MW: 80539.3 Da    PI: 7.3554
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma87g00060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.69.6e-1955149190
             FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 
                      +fY+e+Ak++GFs+r+++++ +       t+  fvC + g++  + ++ + k+rr+r+++r+gC a l+v+k+      +w++t +++ HnHel
  Zosma87g00060.1  55 DFYSEFAKRTGFSIRRHRTEGKdGVGSGLTRLYFVCHRAGNTPIKVTTdDLKQRRNRKSSRCGCSAYLRVSKTMdmgIPEWRITGFKNYHNHEL 148
                      6***************9988773455569999********999887764679999****************998655679*************9 PP

             FAR1  90 a 90 
                       
  Zosma87g00060.1 149 L 149
                      6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.1E-1755149IPR004330FAR1 DNA binding domain
PfamPF105511.3E-14270363IPR018289MULE transposase domain
PROSITE profilePS509669.631545580IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-8554580IPR007527Zinc finger, SWIM-type
SMARTSM005752.7E-5555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MLEEHGIPMD QGSFSMDVVN NAEDSFDRSR LSLESMKDQI PYVGQKFVTH DAAYDFYSEF  60
AKRTGFSIRR HRTEGKDGVG SGLTRLYFVC HRAGNTPIKV TTDDLKQRRN RKSSRCGCSA  120
YLRVSKTMDM GIPEWRITGF KNYHNHELLE PNEVRFLPAY RKISENDKSR ILMFAKTGIS  180
VQQMMRLLEL EKCVEPGYLS FTEKDVRNLL QTCKKVDQID IHDLLRICRN IKERDTNFRY  240
EFMMDVNNKL ENIAWSYAPS IQSYEIFGDV VLFDTSRRLP TFDMPLGIWI GINNYGMPCL  300
FGCVLLREES MLSFSWAIKT FLSFMNGRAP QTVLTDQNMY LKEAIDIEIP QTKHAFAIWL  360
IAAKFPAWFN SILGERYNEW KVELYRLHNL KNIDDFELSW DEMISSFGFC SNKHIADLFA  420
IRNLWALPYL RNHFFAGMMA PCLSKSINSF IQRFLSLRTH FTHFIEQVAV AVDFKNQAAE  480
QQMVQQNICL KTCGPMESQA AAILTPYAFD KLQDELVSAS QYTAFQIDDG SFVARQHTKR  540
DGGRKVIWIP EKEILSCSCN MFEFSGILCR HALRVLSAVN YFEIPCHYLP LRWRRTNSLS  600
TKVITEAASN EHDERIKILQ SMVAALVSEA SKSTECLNLA YEEVSLLLSR LREQPVTEHM  660
STEIKQTVVS SNSIPVLSWA DDSFKSGTNK TEVGQIISN*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930511.10.0protein FAR1-RELATED SEQUENCE 11
RefseqXP_019708337.10.0protein FAR1-RELATED SEQUENCE 11
RefseqXP_029122508.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A0K9NKG40.0A0A0K9NKG4_ZOSMR; FAR1-related sequence 11
STRINGXP_008776582.10.0(Phoenix dactylifera)
STRINGXP_010276293.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151711516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]