PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma87g00950.1
Common NameZOSMA_87G00950
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 205aa    MW: 22672.7 Da    PI: 9.1021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma87g00950.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000576183123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ykC++C+k F +   L  H ++H
  Zosma87g00950.1 61 YKCSICNKAFGSYQALGGHKSSH 83
                     9*********9999999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.61E-761132No hitNo description
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.516188IPR007087Zinc finger, C2H2
PfamPF139123.4E-136185IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
PROSITE profilePS501579.037110137IPR007087Zinc finger, C2H2
SMARTSM003550.31110132IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-11110134IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTNTKWVGIR KRSRKMTTAE EEYLALCLIM LREKNGTTVD ELFANQARPI RALPLPNTLS  60
YKCSICNKAF GSYQALGGHK SSHRKPTPRN ETVKPTSLSS TSTSRSLDKH QCSICFKTFP  120
SGQALGGHKR CHYDGSSESN NNNSTVTSSV GTSSSHHHEF DLNLLPLPEF AFDTPLATKW  180
GCPIEDDEVQ SPLPLKKTHL FLPH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311865.17e-47zinc finger protein ZAT10-like
TrEMBLA0A0K9NL541e-150A0A0K9NL54_ZOSMR; Zinc-finger protein
STRINGVIT_03s0091g00690.t014e-46(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-32salt tolerance zinc finger