PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma88g00080.1
Common NameZOSMA_88G00080
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 242aa    MW: 26842.9 Da    PI: 5.1307
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma88g00080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.48.9e-30169222155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +prl+Wtp+LH+rFv++v++L G ++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Zosma88g00080.1 169 RPRLVWTPQLHKRFVDVVAHL-GLKNAVPKTIMRLMNVDGLTRENVASHLQKYRL 222
                      59*******************.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.875166228IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-30166227IPR009057Homeodomain-like
SuperFamilySSF466894.3E-19167226IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-24170222IPR006447Myb domain, plants
PfamPF002491.8E-8172221IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSQFRQPMED EDVENRVLEW EEGLPSADDL TPLFQNMLPP QLAFAFSVTT KPVKTYQDVN  60
LASQKTFFNL RRCQASSNSS STTTATAAYN LLPSLLPSPF LPPSDIADRG CDVSYSESSK  120
KARFTDSDEI PEDFESNTNS VVCGSGNQEN SVDESTGAER GVVGSSSKRP RLVWTPQLHK  180
RFVDVVAHLG LKNAVPKTIM RLMNVDGLTR ENVASHLQKY RLYVNRIQDG SHRGDDFPFF  240
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A9e-34169224156Transcription factor LUX
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457454.15e-58PREDICTED: transcription factor PCL1-like
RefseqXP_008457455.15e-58PREDICTED: transcription factor PCL1-like
TrEMBLA0A0K9NM941e-179A0A0K9NM94_ZOSMR; Transcription factor LUX
STRINGXP_008457454.12e-57(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.17e-53G2-like family protein