PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma89g00340.1
Common NameZOSMA_89G00340
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 208aa    MW: 23788 Da    PI: 10.4071
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma89g00340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-171560147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W  +Ede+l+++vk++G+++W+ Ia++++  R++k+c++rw++ 
  Zosma89g00340.1 15 RGHWRIDEDEKLLQLVKKYGPHNWNFIAEKLP-DRSGKSCRLRWFNQ 60
                     799*****************************.***********996 PP
2Myb_DNA-binding48.32.4e-1568110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++ T+eE+++lv++  ++G++ W++I++ ++ gRt++ +k++w+ 
  Zosma89g00340.1  68 KALTEEEEKKLVRYQSMYGNK-WALISSFFP-GRTDNAVKNHWHV 110
                      567******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2871161IPR017930Myb domain
SMARTSM007173.5E-141463IPR001005SANT/Myb domain
SuperFamilySSF466897.91E-3014108IPR009057Homeodomain-like
PfamPF002499.8E-171560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-241668IPR009057Homeodomain-like
CDDcd001679.32E-141859No hitNo description
PROSITE profilePS5129422.46762116IPR017930Myb domain
SMARTSM007172.8E-1366114IPR001005SANT/Myb domain
PfamPF002491.6E-1368109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-1869114IPR009057Homeodomain-like
CDDcd001671.88E-1071109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MGVQSFPGIP SPSSRGHWRI DEDEKLLQLV KKYGPHNWNF IAEKLPDRSG KSCRLRWFNQ  60
LDPTINKKAL TEEEEKKLVR YQSMYGNKWA LISSFFPGRT DNAVKNHWHV IMARRRKKRT  120
TLATLFQLLH PDNLLFRTTS STTSSPSPNL NYNKFLAYRR SYKSTTVTAS PSIHVHADGE  180
EKEIGDVDHH PKNAPQLIDF LGIGITS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-3081151107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113118RRRKKR
2113119RRRKKRT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309771.16e-53transcription factor MYB54
RefseqXP_024461017.16e-53transcription factor MYB54
SwissprotQ9SEZ42e-51MY105_ARATH; Transcription factor MYB105
TrEMBLA0A0K9NKE61e-153A0A0K9NKE6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.18e-43myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]