PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma89g00820.1
Common NameZOSMA_89G00820
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 90aa    MW: 10161.3 Da    PI: 9.7331
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma89g00820.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-081458345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W+    + + +a + + ++   +Wk Iar++g g++++++k ++ 
  Zosma89g00820.1 14 VWSMKQNKVFERALAVYDKDapdRWKNIAREVG-GKSEEEVKRHYE 58
                     589999999*********99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.2391065IPR017884SANT domain
SMARTSM007179.4E-51163IPR001005SANT/Myb domain
SuperFamilySSF466897.35E-121369IPR009057Homeodomain-like
PfamPF002494.9E-61458IPR001005SANT/Myb domain
CDDcd001678.52E-61561No hitNo description
Gene3DG3DSA:1.10.10.604.2E-61567IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MASNSIRSSS TNSVWSMKQN KVFERALAVY DKDAPDRWKN IAREVGGKSE EEVKRHYELL  60
VEDVRRIESG FIPYPYGSTA ASTNARSYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-2715751171RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008795931.18e-34protein RADIALIS-like 3
SwissprotF4JVB82e-29RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A0K9NK501e-58A0A0K9NK50_ZOSMR; Protein RADIALIS-like 6
STRINGXP_008795931.13e-33(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-30RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]