PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma89g00880.1
Common NameZOSMA_89G00880
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 213aa    MW: 23897.4 Da    PI: 7.7886
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma89g00880.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66.2e-051091441955
                      HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++L+  lP+a + +++K+s   +L+ A++ I++Lq
  Zosma89g00880.1 109 LLSKLQAALPEA-RSQNGKVSTDKVLQDACDNINNLQ 144
                      689********6.68********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.4E-5108160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-5109162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MHKLYLFDDS QIPIVIHYVK IVIFKTWNET WSAAARPALP TIHIYQFPHP IISCNVLINS  60
ISSTIHPTPS HFTQTHFIPE NLKSDSKNKR IYINTKNINM STDGEIIHLL SKLQAALPEA  120
RSQNGKVSTD KVLQDACDNI NNLQKEVGDL SEKISQLFRT WEMSSNAGTD LAISKHDAGG  180
VPQPQWWDLG FEKPQPHLGV PFSVLRLLVP VT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NME31e-155A0A0K9NME3_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.16e-12bHLH family protein