PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma89g01160.1
Common NameZOSMA_89G01160
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family M-type_MADS
Protein Properties Length: 111aa    MW: 12626.7 Da    PI: 11.0351
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma89g01160.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF633.4e-201054246
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                     +ienk +rqvt++kRr+g++KK +ELSvL d+++  + fs++g+l
  Zosma89g01160.1 10 KIENKCRRQVTYTKRRHGLIKKVYELSVLSDIDITFLSFSPSGQL 54
                     69*****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.843161IPR002100Transcription factor, MADS-box
SMARTSM004328.9E-19160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-19173IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-15323IPR002100Transcription factor, MADS-box
PfamPF003194.6E-181054IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MAGGRRGITK IENKCRRQVT YTKRRHGLIK KVYELSVLSD IDITFLSFSP SGQLSILTRP  60
NKSTEDLWGR YVIDPDLNVQ NREALSGVLK TLKRKRETAF PHPPVLFKKT *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827004.26e-21agamous-like MADS-box protein AGL66
RefseqXP_021714137.12e-20agamous-like MADS-box protein AGL104 isoform X1
RefseqXP_021714138.12e-20agamous-like MADS-box protein AGL104 isoform X2
TrEMBLA0A0K9NKM73e-75A0A0K9NKM7_ZOSMR; MADS-box transcription factor
STRINGERM942414e-21(Amborella trichopoda)
STRINGXP_010680585.11e-19(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-19AGAMOUS-like 104