PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma89g01190.1
Common NameZOSMA_89G01190
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 291aa    MW: 32633.8 Da    PI: 7.0993
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma89g01190.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20132181255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ kl+g
  Zosma89g01190.1 132 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDIAAYKLRG 181
                      59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.01E-34131190No hitNo description
SMARTSM003801.9E-36132195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-32132190IPR001471AP2/ERF domain
PROSITE profilePS5103223.38132189IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-23132190IPR016177DNA-binding domain
PfamPF008477.4E-14133181IPR001471AP2/ERF domain
PRINTSPR003672.4E-11133144IPR001471AP2/ERF domain
PRINTSPR003672.4E-11155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAATLDISVL SDPFDGELMR ALRPFIKDAS ISLPDNTFML PPSSNFIQEN TNTLNTSDYG  60
FGFDFNQSVT CPGGLNLTHF SHAQIQQIPV EFQCQQYQTT MKVQQKQIMS FLTPRASTPM  120
KRTASKISTT KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDIAAYKLR  180
GDFARLNFPD FRHSSDQTRD VLPSSVDAKL QAICQSLENP SKPGKNTKSK SHSVTTNVMV  240
EENGTVDTSP TSPFSNMNFL DLAEQQPFGF HQLEKTVSLE IDFDSIPCCN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22131189160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-22131189463ATERF1
3gcc_A4e-22131189463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307390.37e-68LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-13
TrEMBLA0A0K9NK840.0A0A0K9NK84_ZOSMR; Ethylene-responsive transcription factor RAP2-4
STRINGPOPTR_0005s16690.13e-67(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-49related to AP2 4