PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma8g00710.1
Common NameZOSMA_8G00710
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 610aa    MW: 65417.6 Da    PI: 8.6518
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma8g00710.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-056991123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k F r  nL+ H r H
  Zosma8g00710.1 69 FVCEVCNKGFQREQNLQLHRRGH 91
                    89*******************88 PP
2zf-C2H212.40.00047145167123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  Zosma8g00710.1 145 WKCDKCSKRYAVQSDWKAHSKTC 167
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.5E-66891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.2E-76891No hitNo description
SMARTSM003550.00416991IPR015880Zinc finger, C2H2-like
PfamPF121714.0E-56991IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.0946991IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.2E-7140165No hitNo description
SMARTSM00355140145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MAASSSSSPF FGDVQNQIKH TSEEVPTAAL PPLSAPPPPK KKRNQPGTPY PDAVVIALSP  60
KTLMATNRFV CEVCNKGFQR EQNLQLHRRG HNLPWKLRQK STKEARRRVY LCPEPTCVHH  120
DPSRPLGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHSKTCGTR EYRCDCGTLF  180
SRRDSFITHR AFCDALAQEC ARLPIGGQMY GSTAMAGLAF SQINPQISSI HDPHCSSSTV  240
HLNPSSFRGG GGGCSSSSHL VDHDHLVSPS SSNHLNPSSF RPPTNPSGPS TGYFFAGLSN  300
QDFNTATVNS TNQNSFIQNK SHHGLMQLPP NINAQLPINA PPSTTAFFNL GFFSDTNTTT  360
TNVSTHTHSS NFITPVDHFS GNGEHHPNVD LYSGNLIGDN IGGLSSFYNN ELHTAVLPQM  420
SATALLQKAS EMGATNNNGP SVGSPSIGSS FGSGRGSSSS SNNPKPPIFR GSFGSGGDND  480
GHLQDLMISL ANANAGMLDS NHPLFGGSIH NRHHHQENST DVVGYDGFNT NLGIMNDVKL  540
HQSLSAAAAT MGGSDQLTRD FLGVGGMVRN VGIGGGLTSA QRDQHRRGGL DIGDVFDTGD  600
IKSVNGRLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-35141203365Zinc finger protein JACKDAW
5b3h_F6e-35141203365Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270755.11e-178PREDICTED: protein indeterminate-domain 5, chloroplastic-like
RefseqXP_010270757.11e-178PREDICTED: protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A0K9NJH30.0A0A0K9NJH3_ZOSMR; Putative Zinc finger protein
STRINGXP_010270754.11e-177(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-107indeterminate(ID)-domain 4