PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma8g00940.1
Common NameZOSMA_8G00940
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRF
Protein Properties Length: 483aa    MW: 53091.6 Da    PI: 8.0073
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma8g00940.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.42.9e-24207251145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr+++ ++k+CErHl+rgr+rsrk++e 
  Zosma8g00940.1 207 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHLNRGRHRSRKPVEG 251
                     79****************************************985 PP
2QLQ54.73e-19136171237
             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     +FT++Q+++L++Q+++yK+L a++PvPp Ll+ iqk
  Zosma8g00940.1 136 SFTPSQWMELEHQATIYKCLDAKVPVPPSLLFSIQK 171
                     7*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-11135171IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.563136171IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.0E-14136170IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.693207251IPR014977WRC domain
PfamPF088791.5E-20208250IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDMNVLVGSG FLKHGGRLET EHEEEEQNDE EERWRKMARC NGTTTTATTE DGKEKESLLR  60
SNNNNSSTVF FDSQQMLSFA SSPNGNTFPY HHHHLLFPPS SSSSSSYGGS SGEALGFGSG  120
WVDLDMHGRV MCGAKSFTPS QWMELEHQAT IYKCLDAKVP VPPSLLFSIQ KGATPNVGYT  180
GYSPASFRPT NTFGWGSLPV RFSNGGDPEP GRCRRTDGKK WRCSRDAVVD QKYCERHLNR  240
GRHRSRKPVE GQPGHGKTIM AATSSEKETK PSSATPFHRR CSDARTQQIS FLEETSRNPN  300
FGLLGKSGGQ GCEEPPRQKK KKQPAPQSQP PPQQQQSSSF RHFMDAWSKN QSDRPATIWP  360
DVEQTQLSIS IPNSSLDPVE IQRQEENWAP ISWEAAPSMG GPLGEALNGN SISKNNNTAN  420
TTLNLLTYGW DSNSSPTGVL QKTAFGSLSN STANSPRAGS HCDEPHSRHM GLDLQNSSSM  480
RL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315322PRQKKKKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NJK30.0A0A0K9NJK3_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42903568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.14e-44growth-regulating factor 2